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combineAlignments - Combine alignments from multiple runs to use in variant calling
Published by Torrent Circuit
- Overview
This is a Zero Install feed. To add this program to your Applications menu, choose Zero Install -> Add New Program from the Applications menu. e.g. on Ubuntu:
If you don't see this menu item, install the zeroinstall-injector package from your distribution's repository, or from 0install.net.
Drag the feed's URL to the dialog box that appears. Other environments may use other systems. For example, if you are a ROX desktop user, drag the link to AddApp instead.
Alternatively, to run it from the command-line:
$ 0launch http://torrentcircuit.iontorrent.com/warehouse/download/feedfile/combineAlignments.xml
The 0alias command can be used to create a short-cut to run it again later.
If you don't have the 0launch command, download it from the 0install.net web-site, which also contains documentation about how the Zero Install system works.
- Full name
http://torrentcircuit.iontorrent.com/warehouse/download/feedfile/combineAlignments.xml
- Description
This plugin allows you to combine the alignment information from multiple reports and then those combined reads can be used in the coverageAnalysis and variantCaller plugins.
- Homepage
- Available versions
The list below is just for information; Zero Install will automatically select one of these versions for you.
Version Released Stability Platform Download 2.2.3 2012-05-14 insecure Any Download (2027814 bytes) 2.2.3.21037 2012-05-14 insecure Any Download (1106038 bytes) - Required libraries
This feed does not list any additional requirements.