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combineAlignments - Combine alignments from multiple runs to use in variant calling

Published by Torrent Circuit

Overview

This is a Zero Install feed. To add this program to your Applications menu, choose Zero Install -> Add New Program from the Applications menu. e.g. on Ubuntu:

Adding with GNOME

If you don't see this menu item, install the zeroinstall-injector package from your distribution's repository, or from 0install.net.

Drag the feed's URL to the dialog box that appears. Other environments may use other systems. For example, if you are a ROX desktop user, drag the link to AddApp instead.

Alternatively, to run it from the command-line:

$ 0launch http://torrentcircuit.iontorrent.com/warehouse/download/feedfile/combineAlignments.xml

The 0alias command can be used to create a short-cut to run it again later.

If you don't have the 0launch command, download it from the 0install.net web-site, which also contains documentation about how the Zero Install system works.

Full name

http://torrentcircuit.iontorrent.com/warehouse/download/feedfile/combineAlignments.xml

Description

This plugin allows you to combine the alignment information from multiple reports and then those combined reads can be used in the coverageAnalysis and variantCaller plugins.

Homepage

http://lifetech-it.hosted.jivesoftware.com/docs/DOC-2935

Available versions

The list below is just for information; Zero Install will automatically select one of these versions for you.

VersionReleasedStabilityPlatformDownload
2.2.32012-05-14insecureAnyDownload (2027814 bytes)
2.2.3.210372012-05-14insecureAnyDownload (1106038 bytes)
Required libraries

This feed does not list any additional requirements.