» Main »
galaxyuploader - uploads .bam .sff and .fastq file to a galaxy instance
Published by Torrent Circuit
- Overview
This is a Zero Install feed. To add this program to your Applications menu, choose Zero Install -> Add New Program from the Applications menu. e.g. on Ubuntu:
If you don't see this menu item, install the zeroinstall-injector package from your distribution's repository, or from 0install.net.
Drag the feed's URL to the dialog box that appears. Other environments may use other systems. For example, if you are a ROX desktop user, drag the link to AddApp instead.
Alternatively, to run it from the command-line:
$ 0launch http://torrentcircuit.iontorrent.com/warehouse/download/feedfile/galaxyuploader.xml
The 0alias command can be used to create a short-cut to run it again later.
If you don't have the 0launch command, download it from the 0install.net web-site, which also contains documentation about how the Zero Install system works.
- Full name
http://torrentcircuit.iontorrent.com/warehouse/download/feedfile/galaxyuploader.xml
- Description
This plugin will uploaded the .bam, .sff and .fastq files from a torrent run to the specified galaxy instance. The following information needs to be provided: Galaxy URL, Galaxy API, Galaxy Library ID, Galaxy Folder ID, IonTorrent URL, IonTorrent username and IonTorrent password. The Galaxy API can be found under the user meun in the Galaxy UI. To find the Galaxy Library ID and Folder ID have your galaxy administrator run the command python {galaxydist}/scripts/api/display.py [api key] [galaxyurl/api/libraries] and python {galaxydist}/scripts/api/display.py [api key] [galaxyurl/api/libraries{library id}/contents]
- Homepage
- Available versions
The list below is just for information; Zero Install will automatically select one of these versions for you.
Version Released Stability Platform Download 0.5 2012-07-30 insecure Any Download (5369 bytes) 1.3.1 2012-07-31 insecure Any Download (5351 bytes) Download (5351 bytes) Download (5351 bytes) 1.3.2 2012-08-01 insecure Any 1.3.3 2012-08-03 insecure Any - Required libraries
This feed does not list any additional requirements.